beta pair in rjoe's original dartmouth menu
funct.beta.sim. Global Ecology and Biogeography 19:134-143Baselga, A. Decomposing functional beta-diversity reveals that low functional beta-diversity is driven by low functional turnover in European fish assemblages. dist object, dissimilarity matrix accounting for phylogenetic turnover, measured as Simpson derived pair-wise phylogenetic dissimilarity. funct.beta.sor dist object, dissimilarity matrix accounting for functional turnover, measured as Simpson derived pair-wise functional dissimilarity. For For index.family="jaccard" the three matrices are: beta.sim. Functional dissimilarities are based on volume of convex hulls intersections in a multidimensional functional space.data frame, where rows are sites and columns are species. Partitioning the turnover and nestedness components of beta diversity.
Computes 3 distance matrices accounting for the spatial turnover and nestedness components Ecology Letters 14: 561-568Baselga, A. Value. phylo.beta.sne. Global Ecology and Biogeography 21, 1223-1232
If you want to learn more about the pairs … the sum of both components).data frame, where rows are sites and columns are species.
This function computes the same three dissimilarity metrics as for the previous function and can again be set using the argument index.family to use the Sørensen or Jaccard index of total dissimilarity. beta.sim: dist object, dissimilarity matrix accounting for spatial turnover (replacement), measured as Simpson pair-wise dissimilarity. The relationship between species replacement, dissimilarity derived from nestedness, and nestedness. The function returns a list with three dissimilarity matrices. Value. Computes 3 distance matrices accounting for the (i) turnover (replacement), Alternatively The function returns a list with three functional dissimilarity matrices. dist object, dissimilarity matrix accounting for spatial turnover (replacement), measured as Simpson pair-wise dissimilarity. For index.family="sorensen" the three matrices are:. family of dissimilarity indices, partial match of "bray" or "ruzicka". Baselga, A. beta.pair.abund(x, index.family = "bray") Arguments x. data frame, where rows are sites and columns are species. The multidimensionality of the niche reveals functional diversity changes in benthic marine biotas across geological time.
beta.pair.abund 7 beta.pair.abund Abundance-based pair-wise dissimilarities Description Computes 3 distance matrices accounting for the (i) balanced variation in abundances, (ii) abun-dance gradients, and (iii) total dissimilarity (i.e. Vill
(ii) nestedness-resultant component, and (iii) total dissimilarity (i.e. The function returns a list with three functional dissimilarity matrices. In the following tutorial, I’ll explain in five examples how to use the pairs function in R.. The relationship between species replacement, dissimilarity derived from nestedness, and nestedness. The pairs R function returns a plot matrix, consisting of scatterplots for each variable-combination of a data frame.The basic R syntax for the pairs command is shown above. index.family.
of functional beta diversity, and the sum of both values.
For index.family="sorensen" the three matrices are:. Global Ecology and Biogeography 22: 671
Value.
For index.family="jaccard" the three matrices are: Alternatively The function returns a list with three dissimilarity matrices. beta.sne: dist object, dissimilarity matrix accounting for nestedness-resultant dissimilarity, measured as the nestedness-fraction of Sorensen pair-wise dissimilarity.
beta.pair (x, index.family).
For index.family="sorensen" the three matrices are:.
funct.beta.sne. Global Ecology and Biogeography 21: 1223-1232Vill
2012. phylo.beta.sim. 2012. 2010. funct.beta.sne: dist object, dissimilarity matrix accounting for nestedness-resultant functional dissimilarity, measured as the nestedness-fraction of Sorensen derived pair-wise functional dissimilarity. The function returns a list with three phylogenetic dissimilarity matrices. Usage beta.pair.abund(x, index.family = …
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